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Pipeline Pilot

Rapidly create, test and publish scientific-based services
that automate the ability to access, analyze, report and
share scientific data.

Next Generation Sequencing Collection

Learn more about this new Collection

 

The Next Generation Sequencing (NGS) Collection lets users analyze and interpret the massive datasets generated by the most current DNA sequencing instruments. The NGS Collection comes with a comprehensive assortment of NGS data analysis pipelines that are ready to analyze your data. The unparalleled power and flexibility of the new NGS Collection allows you to accommodate not just current analysis needs, but to adapt to novel applications and computational methods emerging so rapidly in the NGS landscape.

Using NGS components and sample protocols, you can perform common workflows such as de novo sequencing, mapping to a reference genome or reference sequences, and variation detection. The NGS Component Collection supports unpaired read and unpaired reads in both base-space and color-space.

Read the Next Generation Sequencing (NGS) Collection Datasheet

With the Next Generation Sequencing Component Collection you can:

  • Create and execute entirely new data processing pipelines using simple drag and drop construction
  • Assess run quality and coverage through custom interactive web-based reports
  • Add features to any repository, e.g., genes and dbSNP entries
  • Filter data based on pairs proximity, quality and repeated sequences
  • Convert reads to sequences
  • Generate track information for viewing in your favorite browser
  • Mapping reads with BWA, Bowtie, or mapreads
  • Perform de novo assembly with Velvet
  • View mapping stats for your experiment
  • Identify single nucleotide polymorphisms
  • Identify insertions and deletions
  • Detect copy number variation

Next Steps

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