Advanced Imaging Component Collection for the SciTegic Platform

The Advanced Imaging Collection is well suited for nearly any imaging application. The Collection includes image, measurement, and metadata readers for DICOM and HCS vendor specific file formats, in addition to all the industry-standard imaging formats. A range of new tools allow you to alter morphology, process sequences and stacks, and transform, cluster, and segment imaging data like never before. The Image Viewer components provide a simple output option for images and their data.

The Advanced Imaging Collection provides an extensive ensemble of image processing and analysis tools for Pipeline Pilot’s powerful workflow automation and visual programming platform. With processing and analysis capabilities that rival even the most sophisticated image processing packages available, the collection features a user-friendly environment that does not require computer programming skills.

Beyond the Standard Imaging Collection, the Advanced Imaging collection will allow you to:

• Easily build and modify custom algorithms
• Extract and manipulate regions and sub-regions in images
• Calculate advanced intensity, shape and morphology statistics within regions
• Associate objects in two images based on spatial proximity and calculate co-localization statistics
• Apply learning and modeling techniques to image regions for advanced processing and analysis
• Analyze and process image stacks and sequences

 

Powerful New Tools for Integrating Image and Image Associated Data

The Advanced Imaging Collection brings Pipeline Pilot’s powerful data integration capabilities to your workflows enabling unparalleled learning, clustering, modeling, statistical analysis, reporting and archiving of images and associated data. Template protocols allow rapid development of custom drill-down reporting and image link capabilities. With the Pipeline Pilot open platform, almost any standard image file format can be accommodated.

The Advanced Imaging Components

Math and Statistics:. Calculate advanced measurements on objects and groups of objects. Components include: Advanced Image Region Shape Statistics and Advanced Image Region, Region and Shape Attributes, Co-Localization Statistics, and Compare To Constant.

Learning and Clustering: Segment images by grouping pixels and regions. Available components include: Auto Thresholding, KMeans estimating and segmenting, Segment By Distance, Supervised Learning of Gaussian Model , Cluster Kmeans and Principal Component Analysis.

Advanced Morphologies: Create sophisticated algorithms for region identification Available components include: Convex Hulls, Fill Holes, Find Peaks, Flood Fill From Markers, Hit Miss Transform , Morphological Gradient , Thinning and Thickening, Top Hat , Watershed From Markers

Working with Regions and Objects: Easily crop objects, eliminate edge touching objects, filter regions; perform co-localization of objects and trace boundaries.

Sequences and Stacks: Perform processing into multiple dimensions with tools that allow you to: create, unpack, extract, and project 3D image stacks; slice, delay, linear transform 3D data, masked accumulator, and optical flow

Transforms: Transform image data with tools that allow you to perform contrast enhancement, carry out distance transformations, find corners, perform hough transformations, create image pyramids, and manipulate texture features

Utilities: Access a number of additional utilities that allow you to draw lines, circles, ellipses and polygons; use a pseudocolor converter for images and regions.