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Fundamentals in Pipeline Pilot Training

Overview and Audience


This is an introductory course that will be beneficial for users who have little or no experience with Pipeline Pilot. The course covers many of the out-of-the-box components and how to use these components to modify existing protocols or create new ones. All basic concepts necessary to create or manipulate protocols are covered.

This course is a full-day class.

On completion of the workshop attendees should have the ability to modify existing protocols and create custom protocols utilizing Pipeline Pilot’s wide range of functionality

Sample Agenda

  • Overview
    • The Power of Pipeline Pilot
    • Definitions
    • Pipeline Pilot Main Window
  • Client Server Architecture
    • Developing a Protocol
    • Running an existing protocol
    • Creating a new protocol
    • Handling components
    • Documenting a protocol
    • Sequential execution
    • Exercises: I
  • Components
    • Component Types
    • Exercises: II
  • General Data Manipulation and PilotScript
    • Data records and Data properties
    • General Data Manipulation
    • General Data Filtering
    • Exercises: III
    • PilotScript
    • Exercises: III (this time using Pilotscript)
    • LIKE and RLIKE
    • Other PilotScript Functions
    • Global Variables
    • Exercises: IV
  • Molecular Operations
    • Molecular objects
    • Molecule From/To Text components
    • Molecular Manipulations
    • Substructure searching
  • Merge and Join
    • Merge
    • Join
    • Exercises: V
  • SubProtocol Creation and Handling
    • Why subprotocols?
    • Creating a subprotocol
    • Parameter promotion
    • Subprotocol data flow
    • . Subprotocol utilities
    • Excercises: VI
    • RunToCompletion
    • Exercises: VII
  • Miscellaneous Topics
    • Temp Files
    • Version Management
    • Defining New Parameters
    • Error Handling

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